Home FAQs Can I run multiplex reactions with the Luna Direct Probe qPCR 4X Master Mix with UDG? Do I need to change my reaction conditions?

FAQ: Can I run multiplex reactions with the Luna Direct Probe qPCR 4X Master Mix with UDG? Do I need to change my reaction conditions?

Yes, multiplex reactions amplifying up to 3 gDNA or 6 cDNA targets have been successfully run using the Luna Direct Probe qPCR 4X Master Mix with UDG. Select the different fluorophores corresponding to separate detection channels of the real-time instrument. Each target should be tested in a singleplex reaction first. For each amplicon, begin by including 400 nM of forward and reverse primer and 200 nM probe in each reaction. If performance of a particular amplicon is seen to deteriorate when used in a multiplex assay as compared to its singleplex results, reactions may require optimization. It can be helpful to reduce the primer concentrations for an abundant or high-copy target and/or increase the primer concentrations for the low abundance or low-copy targets. Further optimization may be needed as multiplexity increases, using the following parameters as guidelines: primer 200–900 nM, probe 100–500 nM.